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Mamastrovirus 1
Mamastrovirus 2
Mamastrovirus 3
Mamastrovirus 4
Mamastrovirus 5
Mamastrovirus 6
Mamastrovirus 7
Mamastrovirus 8
Mamastrovirus 9
Mamastrovirus 10
Mamastrovirus 11
Mamastrovirus 12
Mamastrovirus 13
Mamastrovirus 14
Mamastrovirus 15
Mamastrovirus 16
Mamastrovirus 17
Mamastrovirus 18
Mamastrovirus 19
Unassigned

Genera

  Family: Astroviridae
    Genus: Mamastrovirus
      Species: Unassigned
   
 
Bovine astrovirus  (BAstV) (find all bovine astroviruses on GenBank)
Virus Strain Region Length Accession No. Reference Comments
BAstV B18/HK CG 6300 HQ916313 Tse et al., 2011  
BAstV B170/HK CG 6317 HQ916314 Tse et al., 2011  
BAstV B34/HK ORF1a(p)+ORF1b+ORF2 4771 HQ916315 Tse et al., 2011  
BAstV B76/HK CG 6253 HQ916316 Tse et al., 2011  
BAstV B76-2/HK CG 6301 HQ916317 Tse et al., 2011  
BAstV GX7/CHN/2014 CG 6233 KJ620979 Huang et al., unpub.  
BAstV GX27/CHN/2014 CG 6233 KJ620980 Huang et al., unpub.  
             
Bovine astrovirus NeuroS1 (BAstV-NS1)
Virus Strain Region Length Accession No. Reference Comments
BAstV-NS1 cattle/NeuroS1/USA/2011 CG 6476 KF233994 Li et al., 2013  
             
Bovine astrovirus CH13 (BAstV-CH13)
Virus Strain Region Length Accession No. Reference Comments
BAstV-CH13 cattle/CH13/Switzerland CG 6530 KM035759 Bouzalas et al., 2014  
             
California sea lion astrovirus 3 (CSLAstV-3)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-3 CSL3 (USA/2008) pol(p)+capsid(p) 1340 FJ890353 Rivera et al., 2010  
             
California sea lion astrovirus 4 (CSLAstV-4)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-4 csl/1136/California/2010 CG 6650 JN420351 Li et al., 2011  
             
California sea lion astrovirus 5 (CSLAstV-5)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-5 csl/1148/California/2010 CG 6640 JN420352 Li et al., 2011  
             
California sea lion astrovirus 6 (CSLAstV-6)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-6 csl/1153/California/2010 CG(p) 5941 JN420353 Li et al., 2011  
             
California sea lion astrovirus 7 (CSLAstV-7)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-7 csl/1169/California/2010 CG 6585 JN420354 Li et al., 2011  
             
California sea lion astrovirus 8 (CSLAstV-8)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-8 csl/1207/California/2010 CG(p) 5376 JN420355 Li et al., 2011  
             
California sea lion astrovirus 9 (CSLAstV-9)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-9 csl/1234/California/2010 CG 6627 JN420356 Li et al., 2011  
             
California sea lion astrovirus 10 (CSLAstV-10)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-10 csl/9715/California/2010 CG 6549 JN420357 Li et al., 2011  
CSLAstV-10 csl/9795/California/2010 CG 6322 JN420358 Li et al., 2011  
             
California sea lion astrovirus 11 (CSLAstV-11)
Virus Strain Region Length Accession No. Reference Comments
CSLAstV-11 csl/9822/California/2010 CG 6618 JN420359 Li et al., 2011  
             
Capreolus capreolus (roe deer) astrovirus (CcAstV) / porcine astrovirus
Virus Strain Region Length Accession No. Reference Comments
CcAstV-1 deer/VS3600005/2010/Denmark ORF1(p)+ORF2 3051 HM447045 Smits et al., 2010  
CcAstV-2 deer/VS3600006/2010/Denmark ORF1(p)+ORF2 3052 HM447046 Smits et al., 2010  
PAstV-? swine/PoAstV12-4/Canada/2006 ORF1(p)+ORF2 2889 HM756259 Luo et al., 2011  
PAstV-? swine/PoAstV14-4/Canada/2006 ORF1(p)+ORF2 3030 HM756260 Luo et al., 2011  
PAstV swine/JWH-1/2009/China ORF1(p)+ORF2 3544 HQ647383 Lan et al., 2011  
             
Cheetah astrovirus (ChAstV)
Virus Strain Region Length Accession No. Reference Comments
ChAstV FL-2007 (USA, 2007) ORF2(p) 628 EU650331 Atkins et al., 2009  
ORF1b(p) 367 EU650332 Atkins et al., 2009  
             
Feline astrovirus 2 (FeAstV-2)
Virus Strain Region Length Accession No. Reference Comments
FeAstV-2 cat/1637F/Hong Kong/2012 CG 6795 KF499111 Lau et al., 2013  
             
Feline astrovirus Viseu (FeAstV-V)
Virus Strain Region Length Accession No. Reference Comments
FeAstV-V cat/Viseu/Porugal/2012 CG 6780 KF374704 Ng et al., unpub.  
 
Feline astrovirus D1 (FeAstV-D1)
FeAst-D1 cat/FAstV-D1/USA/2013 CG 6598 KM017741 Zhang et al., unpub.  
             
Fox astrovirus (FoAstV)
Virus Strain Region Length Accession No. Reference Comments
FoAstV fox 5/Netherlands/2012 CG(p) 6456 KC692365 Bodewes et al., 2013  
             
Human astrovirus V1182
Virus Strain Region Length Accession No. Reference Comments
HAstV-V1182 V1182 (Kolkata, India, 2004) ORF1 4275 AB325804 Bhattacharya et al., unpublished  
             
Human astrovirus SZ908/China/2008
Virus Strain Region Length Accession No. Reference Comments
HAstV-SZ908 human/SZ908/China/2008 ORF1a(p)+ORF1b+ORF2 5977 GQ267696 Zhu et al., unpublished  
             
Human astrovirus MLB3
Virus Strain Region Length Accession No. Reference Comments
HAstV-MLB3 human/Vellore/26564/2004 CG 6124 JX857870 Jiang et al., 2013  
             
Human astrovirus VA2
Virus Strain Region Length Accession No. Reference Comments
HAstV-VA2 human/Stl/WD0680/2009 CG 6531 GQ502193 Finkbeiner et al., 2009c  
             
Human astrovirus VA3
Virus Strain Region Length Accession No. Reference Comments
HAstV-VA3 human/Vellore/28054/2005 CG 6581 JX857868 Jiang et al., 2013  
             
Human astrovirus VA4
Virus Strain Region Length Accession No. Reference Comments
HAstV-VA4 human/Nepal/S5363/2008 CG 6518 JX857869 Jiang et al., 2013  
             
Human astrovirus BF34
Virus Strain Region Length Accession No. Reference Comments
HAstV-BF34 BF34/Burkina Faso/2010 CG 6577 KF859964 Phan et al., 2014  
             
HMO Astrovirus A
Virus Strain Region Length Accession No. Reference Comments
HMO-AsV-A hu/NI-295/Nigeria/2007 CG 6534 GQ415660 Kapoor et al., 2009  
             
HMO Astrovirus B
Virus Strain Region Length Accession No. Reference Comments
HMO-AsV-B hu/NI-196/Nigeria/2007 ORF1ab(p)+ORF2 3067 GQ415661 Kapoor et al., 2009  
             
HMO Astrovirus C
Virus Strain Region Length Accession No. Reference Comments
HMO-AsV-C hu/NE-3010/Thailand/2001 ORF1ab(p)+ORF2 3130 GQ415662 Kapoor et al., 2009  
             
Mink astrovirus: see Mamastrovirus 10
             
Murine astrovirus (MuAstV)
Virus Strain Region Length Accession No. Reference Comments
MuAstV TF18LM/US/2011 ORF1b(p)+ORF2 3263 JQ408745 Farkas, unpub.  
MuAstV STL 1/US/2011 CG 6838 JX544743 Yokoyama et al., 2012  
MuAstV STL 2/US/2011 CG 6827 JX544744 Yokoyama et al., 2012  
MuAstV STL 3/US/2011 ORF2 2610 JX544745 Yokoyama et al., 2012  
MuAstV STL 4/US/2011 ORF2 2616 JX544746 Yokoyama et al., 2012  
MuAstV M-52/USA/2008 CG 6543 JF755422 Phan et al., 2011  
  BSRI1/USA/2012 CG(p) 5274 KC609001 Ng et al., 2013  
             
Ovine astrovirus 2 (OAstV-2)
Virus Strain Region Length Accession No. Reference Comments
OAstV-2 sheep-TB3/Hungary/2009 ORF1(p)+ORF2 2474 JN592482 Reuter et al., 2012  
             
Porcine astrovirus ? (PAstV-?)  (find all porcine astroviruses on GenBank)
Virus Strain Region Length

Accession No.

Reference Comments
PAstV-? Austria ORF2(p) 391 DQ517523 Indik et al., 2006  
PAstV-? PUJC3 (Colombia) ORF2(p) 398 FJ154761 Ulloa and Gutierrez, 2010  
PAstV-? PUJC33 (Colombia) ORF2(p) 398 FJ154762 Ulloa and Gutierrez, 2010  
PAstV-? PUJP36 (Colombia) ORF2(p) 398 FJ154763 Ulloa and Gutierrez, 2010  
PAstV-? PUJC35 (Colombia) ORF2(p) 398 FJ154764 Ulloa and Gutierrez, 2010  
PAstV-? PUJC26 (Colombia) ORF2(p) 398 FJ154765 Ulloa and Gutierrez, 2010  
PAstV-? PUJC23 (Colombia) ORF2(p) 398 FJ154766 Ulloa and Gutierrez, 2010  
PAstV-? PUJP38 (Colombia) ORF2(p) 398 FJ155801 Ulloa and Gutierrez, 2010  
PAstV-? PUJP65(Colombia) ORF2(p) 398 FJ155802 Ulloa and Gutierrez, 2010  
PAstV-? PUJP44 (Colombia) ORF2(p) 398 FJ155803 Ulloa and Gutierrez, 2010  
PAstV-? PUJP48 (Colombia) ORF2(p) 398 FJ155804 Ulloa and Gutierrez, 2010  
PAstV-? PUJP55 (Colombia) ORF2(p) 398 FJ155805 Ulloa and Gutierrez, 2010  
PAstV-? PUJP47 (Colombia) ORF2(p) 398 FJ155806 Ulloa and Gutierrez, 2010  
PAstV-? PUJP46 (Colombia) ORF2(p) 398 FJ155807 Ulloa and Gutierrez, 2010  
PAstV-? PUJP53 (Colombia) ORF2(p) 398 FJ155808 Ulloa and Gutierrez, 2010  
PAstV-? PUJP61 (Colombia) ORF2(p) 398 FJ155809 Ulloa and Gutierrez, 2010  
PAstV-? PUJP5 (Colombia) ORF2(p) 398 FJ155810 Ulloa and Gutierrez, 2010  
PAstV-? PUJP55V (Colombia) ORF2(p) 653 FJ160480 Ulloa and Gutierrez, 2010  
PAstV-? PUJP44V (Colombia) ORF2(p) 642 FJ160481 Ulloa and Gutierrez, 2010  
PAstV-? PUJPP47V (Colombia) ORF2(p) 665 FJ160482 Ulloa and Gutierrez, 2010  
PAstV-? PUJP5V (Colombia) ORF2(p) 704 FJ160483 Ulloa and Gutierrez, 2010  
PAstV-2 swine/JWH-1/China/2009 ORF1(p)+ORF2 3544 HQ647383 Lan et al., 2011  
PAstV-2 swine/2007/HUN ORF1b(p)+ORF2 3625 GU562296 Reuter et al., 2011  
PAstV-2 swine/12-4/Canada/2006 ORF1b(p)+ORF2 2889 HM756259 Luo et al., 2011  
PAstV-2 swine/14-4/Canada/2006 ORF1b(p)+ORF2 3030 HM756260 Luo et al., 2011  
PAstV-2 swine/43/USA/2010 CG 6318 JF713710 Shan et al., 2011  
PAstV-2 swine/51/USA/2010 CG 6358 JF713712 Shan et al., 2011  
PAstV-2 swine/US-IA122/2011 CG 6334 JX556690 Xiao et al., 2013  
PAstV-3 swine/16-2/Canada/2006 ORF1(p)+ORF2 2931 HM756261 Luo et al., 2011  
PAstV-3 swine/US-MO123/2011 CG 6460 JX556691 Xiao et al., 2013  
PAstV-4 swine/35/USA/2010 CG 6639 JF713713 Shan et al., 2011  
PAstV-4 swine/US-P2011-1 ORF1b(p)+ORF2 2698 JX684071 Xiao et al., 2013  
PAstV-4 wild boar/WBAstV-1/2011/HUN CG 6707 JQ340310 Reuter et al., 2012  
PAstV-4 swine/US-IL135/2011 CG 6647 JX556692 Xiao et al., 2013
PAstV-5 swine/33/USA/2010 CG 6478 JF713711 Shan et al., 2011  
PAstV-5 swine/US-IA122/2011 CG 6500 JX556693 Xiao et al., 2013  
PAstV-5 swine/US-P2011-2/2011 ORF1b(p)+ORF2 2508 JX684072 Xiao et al., 2013  
PAstV-5 swine/CC12/Canada/2009 ORF1b(p)+ORF2 3029 JN088537 Laurin et al., 2011  
             
Porcupine astrovirus Hb (PoAstV-Hb) (related to PAstV-2)  
Virus Strain Region Length Accession No. Reference Comments
PoAstV-Hb LP084/Guangxi/China/2011 CG 6090 KJ571486 Hu et al., 2014 Host: Hystrix brachyurus
             
Rabbit astrovirus (RaAstV)  
Virus Strain Region Length Accession No. Reference Comments
RaAstV rabbit/TN-10-2208/USA/2010 CG 7353 JF729316 Stenglein et al., 2012  
             
Rat astrovirus (RAstV)  
Virus Strain Region Length Accession No. Reference Comments
RAstV rat/RS118/HKG/2007 ORF1(p)+ORF2 4940 HM450381 Chu et al., 2010 Rattus norvegicus
RAstV rat/RS126/HKG/2007 ORF1(p)+ORF2 4878 HM450382 Chu et al., 2010 Rattus norvegicus
             
Steller sea lion astrovirus 1 (SSLAstV-1)  
Virus Strain Region Length Accession No. Reference Comments
SSLAstV-1 Ssl1 (USA/2008) pol(p)+capsid(p) 1348 FJ890354 Rivera et al., 2010  
             
CG = complete genome; (p) = partial gene sequence
   
 

References

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